From raw data to biological insight
- Comprehensive NGS, proteomics, and metabolomics analyses
- Biological interpretation through term enrichment, GSEA, and GSVA
- Co-expression and correlation networks to uncover structure in your data
Beyond differential expression
- Reconstruction of regulatory networks using structural equation models, Bayesian approaches, and network learning
- AI tools and Machine learning for subgroup discovery and classifier development
- Integrated analysis of complex, multi-layered datasets
Smart use of existing data
- Integration of public genomics and transcriptomics datasets (ArrayExpress, SRA, GDC)
- Reuse of public proteomics resources (ProteomeXchange)
- Contextualization of your own experiments with large reference cohorts
Learning, publishing, and doing it right
- Study design, power estimation, and experimental planning
- Reproducible workflows in R / Quarto and Python
- Training in omics data analysis
- Publication-ready figures and Materials & Methods support